i honestly don't think they're interchangeable.
i know the S197 uses an analog frequency over GENCOM/GENMON to communicate with the regulator
the 2005 wiring harness would have a 3 pin regulator connector wired as follows:
Pin #1 (Yellow) - GENMON - Generator Monitor Circuit - goes to PCM Connector (C175e) Pin #5
Pin #2 (Yellow/Light Blue) - GENCOM - Generator Communication - goes to PCM connector (C175e) Pin #13
Pin #3 (Orange/Light Blue) - Hot at all times, used for overload protection - Goes to BEC Connector (C1035b) Pin #C9
the 1998 Cobra wiring harness would have a 3 pin regulator connector (C154) wired as follows:
Pin #1 (Yellow/White) goes to a 20A fuse
Pin #2 (White/Black) Regulator sense (if i remember correctly this plugs back behind the cobra alternator)
Pin #3 (Light Green/Red) Goes to the instrument cluster (Warning light) and is turns hot with ignition to "excite" the alternator