There is a very vocal group that says gears are a waste in Coyote Automatics, but 4.10's helped my '14 GT at the dragstrip and they make my car waaaaay more entertaining as a daily driver!
I believe that picking the "best" gears depends on your particular car and the other mods you're pairing them up with. Since your car is NA and you're likely revving it higher than stock with your CJ intake manifold, then I'd suggest more gear for your particular car to get you (and keep you) in the higher rpm's. If you're running a 28" tall drag radial, 3.90's or 4.10's will let you get through the traps at the top of 4th gear in a 1/4 mile. And, if you go with a big stall converter, as well, your car will stay in the powerband even on upshifts. And, if staying at higher rpm's is the plan, a good set of long tube headers would compliment the breathing mods you already have.
There are plenty of Coyotes that work better with stock gears, depending on the other mods and intended use of the car. And, plenty of Coyotes benefit from steeper gears. It all comes down to choosing gears & mods that work in harmony in the same rpm range.