here place to start give them call https://www.l1diagnostics.com/. flagshipone 1100, way over priced got mine though oreilly auto part 400, that over priced, find one at junk yard 100. then need reprogramed, +keys need repr and ya need 2 keys,if your old ecu has tune make sure it be pull from...
when i started out as mech we rebuilt everything, carb, starter, alt,, the shop closes to me shut down 2 years ago, napa was goto for rebuild kits.
ya know how that story go`s
like others have posted. if it ran good be4 the clutch it related to that,missing the ground wire or not tightened down,O2 sensor not pluged in or in the wrong location,
ya need to post the codes if you want any more help,a lot of shops will not work on the veh with mods and tunes,
i soldered mine back on, i tried all the glue method none of them lasted long
you can poop the glass from to much heat so try the glue first,
i think the timer not working that why it over heating separating from the contact pad
try forscan.org software the ecu ctl all of it, see in the pic no mil lamp, but ecu was smoked ran like shit, if your going to own mustang get this software
try forscan.org it ford software its got better dign capability, it will narrow down what wrong with your car, https://forscan.org/download.html <== that link
the pic is telling me my ecu is smoked and yes it was it would throw code for part i know worked, new-used programmed ecu cars run nice
i put cats from amazon on my wife car after p0430 it blow substright out tail pipe, all stock under hood= 2 new cats +4 new 02 sensor, it had pypes exhaust cut off failed cat tiged new one on...