I just put a new clutch and flywheel, FRPP suspension, axleback, driveshaft, brake rotors and pads, replaced all smoked lenses with OEM (to pass inspection), and new rear end in friend's white 2007 GT/CS with 64k miles I bought. Plus the usual complete fluid replace. I even bought a new Cervini hood and scoop and rear spoiler to replace the car's appearance theme once I have a bit more free cash.
It's my daily fair weather "beater". It's loud, in your face, and a fun commuter. I'd never get any of the upgrade costs back if I tried to sell or trade it in (especially with the upcoming paint job), but they were worth it for me to get another 60k+ miles out of it before I retire. I got the car for $10k, but I expect it to last a solid 5 years before I might be bored. I'm not a fan of the 2011+ body styles (I bought a 2011 and sold it Sept 2013) so I don't feel the need to upgrade. But that's just me.
I'm not sure if I'd spend money on performance improvements at this time though. 100k is a lot of wear on the internals, and pushing too much doesn't seem wise unless you rebuild the motor top to bottom. Personally, I'd love to build an all motor powerhouse if the top or bottom end went on either the 2005 or 2007, but that's only if something went up. Forced induction, especially high boost, while reliable is adding risk on a tired drivetrain. But if you have the money to sustain that, what the heck!
In summary, tough call. If you have an emotional attachment to the car, do NOT sell it now. It will hurt and you'll feel regret. I did that way too many times and it's been a hard lesson to learn. Upgrade the worn parts and enjoy the car. If you're itching for something newer, then just do it. I think at the end it's how you feel about the car. We've had shit weather for months, and I just am itching to take the car out today and rule the road for a few hours.
The real problem is what to do with my 2005. There are very few road miles, it's been raced a bit, and I've spent money putting it back in street trim. It sits in the garage. A real street beast now, but I can't bring myself to replace the racing clutch with a tamer street version. It needs a new identity. But I'm NEVER selling the "Boss".
Sorry, not sure anything I've written is all that useful. Just go with your gut...
Good luck.