The car isn't running as well now that the rear O2 light is on. This is something that should of been turned off in the tune. But every tuner out there has made the mistake of not turning them off at one time or another. It happens. But the PCM is telling the engine to dump more fuel to cool off the cats that aren't there. So you get shitty gas mileage and performance. Once the rear O2 sensors are turned off, the tune should run a lot better.
There isn't an option to turn the O2 sensors off available to the end SCT Programmer customer. The tuner has to do it in their software.