Going from the stock dual 55mm TB to any dual 62mm TB would require a tune since the airflow will be increased at any given throttle angle.
BBK advise that you check the TPS voltage of your stock TB before you remove it, and adjust their TB to the same TPS voltage during installation. It should be 1.19-1.31v with the blades in the idle position.
Not necessarily Dino......I've personally done this myself several times on my car in both directions (stock to BBK\BBK back to stock\stock to FP 62mm TB) w\o making any tune changes w\o issue. It will depend on how the individual who initially set up the BBK 62mm TB set the TPS stop position AND following the PCM KAM reset\idle relearn procedure after any TB swapouts.
The reason why you take the TPS output voltage reading from the stock TB w\ KOEO 1st is for reference TPS position relative to match the tuning so when the BBK 62mm TB is properly set back to this exact TPS output voltage the PCM has nothing out of spec so it will control the 62mm TB just as if the stock 55mm TB is still installed since they're reporting the same TPS voltage position output signal at KOEO back to the PCM. The rest is the PCM readjusting TB blade angle to maintain the same desired idle RPM's\load% as it would do w\ the stock 55mm TB & I have never witnessed mine go out of range. The FP 62mm TB's TPS stop is preset to the std TPS 1.19v output which is in the PCM's ability to self-calibrate\readjust to IF a full KAM reset\idle relearn is done after installing it (my tune was set to use TPS 1.16v output as measured on my Ford preset stock OEM 55mm TB).
Been here, done that. I've made mention of all this in my Lunati VooDoo cam thread. I never had any TB over rotation.......if you fully clear the KAM by batt disconnect & allow the PCM to go thru full relearn idle 1st before doing anything else. The main reason I replaced my BBK 62mm TB is finding vacuum leaks thru both outer TB butterfly shaft seals from smoke leak testing, not due to any operation issues. The plastic gear binding issue in these BBK TB's is real as I've witnessed this myself & addressed it using lube (which BBK instructions say not to do). But we don't know if the OP's BBK 62mm TB actually has this plastic gear bind issue. If the TB butterflies open\close properly & fully when no power is hooked up to the actuator, then there is no drag\sticking issue w\ it.
You're reusing the OEM Ford TB electronics from the stock OEM 55mm TB w\ the BBK 62mm TB so if the electronics are bad, they were either bad prior swapout, got damaged during swapout or went bad after swapout.....BBK #1763 62mm TBs don't come w\ any electronics preinstalled. OP has already replaced the TPS on his BBK 62mm TB.......hopefully w\ the 3rd gen OEM MC TPS sensor (the big square rectangular one used on later MY Ford TB's) as the 1st 2 gen TPS's were known to have issues. From the rest of his posting the actuator looks to be operating Ok.
But all this isn't gonna help the OP as he inherited all this after the fact (got no reference data to go off of) so the only thing I can think of to do w\o going thru the tune is to check the TPS at KOEO to see where the output voltage is & if needed, to reset the TPS stop on BBK TB to set TPS voltage output to the 1.19v std (where Ford sets the TPS stop to on all FP 62mm TB's......to facilitate a plug & play swap) then clear KAM & perform an idle relearn to see if it straightens back up. To do this the TB actuator will have to be removed from the BBK TB to access the TPS stop Allen lock screw at which time the plastic gearing will be exposed so the white lithium grease can be applied as well.
But again, the OP typed that all this was operating fine until recently so all this may be a moot issue. If the P2135 DTC is gone & hasn't reappeared, then this A\B correlation issue is also gone thus why I typed for OP to clear KAM & do an idle relearn thru PCM since the TB TPS changeout to see if all this goes away. Since OP has posted that the P2196 DTC has also cleared & gone away then this says that the B1S1 O2 sensor issue is gone & was caused from some other issue......why I suggested to look at the EVAP CPV. This valve is easy to test......just unclip it from it's mount bracket & disconnect the big line to the EVAP canister, leave it connected to IM then start car at a cold start (PCM disables EVAP CPV until ECT is >170*F so no need to unplug it & set off an EVAP CPV DTC....CPV is normally closed) & check at the big line connector on CPV for vacuum......if vacuum is present then CPV is bad & needs replaced.....which can create environment to cause the P2196 DTC due to excess fuel vapor draw\excess unmetered air draw into IM throwing off STFT\LTFT thus can interfere w\ the O2 sensor operation. OP has a FRPP IM installed so I would also suggest to check to see if PCM is excessively drawing unmetered air\fuel fumes into IM thru looking at the EVAP_% & EVAP_inH2O PIDs along w\ the STFT\LTFT PIDs thru live data in his scan tool. OP, what did the plugs look like? Especially the B1 plugs?
Again, ask me how I know...............
OP, does your scan tool report IM Readiness & all checks come back as ready or OK w\ no FF data stored?
From my experience most tuners won't touch the TB tuning in the tune (gain, integral & proportional control settings) if the TB is functioning. My tuner never touched mine thruout as the TB was functioning properly from the beginning (I had already swapped out TB's prior on the same stock tune\later Bama tune & on all following On3 dyno tunes prior tuning sessions). Now if a known good spare OEM 55mm TB full assembly was available, I'd swap it in as well to verify as all odds says the TB tuning in tune is still stock........
But now we're getting into the potential parts cannon scenario which can be costly which I wasn't trying to do thus why I typed for the OP to start 1st w\ the things that don't require diagnostic equipment or buying parts to swap in as "TS'ing diagnostic equipment", just some time & some effort moving existing parts around. He does have a scan tool that can display live data......but I'd like to know what brand\type scan tool to know what the scanner's capabilities are before I start giving any more involved checking procedures as the OP also typed that his mechanical skills are modest at best........we're messing w\ HIS money, not ours. A rundown of all the live data PID displayed while engine is running would be very helpful for us to look at to see what's actually going on (we're trying to TS thru a computer screen relying on the OP's post info......).
I find it very odd that the OP has a local shop that refused to look at\TS his car because it has aftermarket components installed........none of this changes the base operating principals\procedures from OEM........but I can also understand why a shop would refuse as well.
1 thing that was mentioned is to get rid of the MSD coils.......this I definitely agree with doing now & replace them w\ the appropriate OEM Ford MC coils (if late 08 should be the brown boot MC DG521 COP's).
OP, what exact DTC came up after starting car w\ the loose coil?
Sorry for the long post..........