Here's a video by FordTechMakuloco on this very subject:
Ford Quick Tips: #39 New Ford Vehicles with Ghost Misfires After Repairs - YouTube
You'll note this is THE REAL FIX when aftermarket camshafts are installed.....this can be done on the Spanish Oaks PCM as well even though it can also do this thru the 60-40 DFCO Misfire Monitor Relearn code in the PCM (this is how all new Ford vehicles have the MM learned off the assembly line). The Ford IDS method is best as it removes the possibility of driveline variations affecting the MM relearn during the DFCO part from road conditions, CV\U-joint condition as well as rear gear backlash variations due to the driveline being physically connected to the engine's crankshaft while driving (in a stall in neutral so no connection to driveline).
Keep this in mind whenever you get your car tuned OR you reset the KAM in PCM for any reason on a 05-10 S197 PCM......... Coyote\Copperhead PCM equipped cars don't have this problem as this is all done & stored in the PCM's non-volatile mem thru the Ford IDS or if you have a SCT X4 tuner, thru it's Crank Relearn process. Note that SCT X4 Crank Relearn only works w\ a Copperhead PCM (Coyote), not w\ a Spanish Oaks PCM (05-10) due to the 60-40 MM Relearn code being active in the PCM.
1 other item of note concerning the 60-40 DFCO Misfire Monitor Relearn coding in the 05-10 PCM's:
Just driving the car normally WILL NOT complete this monitor relearn.....you have to
intentionally drive the car according to the process I outlined in my prior post in order to ensure this happens or the misfire monitor will not enable thus can give out ghost misfires or record no misfires at all. You can check for this by pulling up Mode 6 Self-Check data, Misfire Monitor then check the Catalyst Mid Bed Temp readings.....if all 3 CMBT check readings show this (-40*F...my scan tool is set for imperial, not metric FYI) then this indicates that the 60-40 MM relearn process either 1.) hasn't been performed after a KAM reset thus disabled OR 2.) that the process didn't complete due to the relearn process getting interrupted after initiation but before full completion thus disabled so has to be performed again during the next full drive cycle (after car has sat w\ key off, ECT cool down & sat idle for at least 12-18 hrs). You'll be waiting a LONG, LONG time driving the car normally hoping that this MM relearn happens..........
Ask me how I know this...........
Ask yourself how many times you've actually left your foot off the accelerator pedal after exceeding 60 MPH & kept your foot off the brake pedal & clutch pedal as well to allow the car to coast\slow down on engine braking to below 40 MPH & do it in 3 successive patterns during a drive cycle while driving normally..........?
Uh-huh.
Hope this helps.