Hi StockishS197,
1st off, from how I'm interpreting your posting, you're confused on just what the 4-digit PCM code (hardware build ID within the physical PCM in question....ie, CPU, board layout, I\O, circuit board pinout, etc) implies vs my reply post in another thread that concerns the 7-digit Spanish Oaks OS\Strategy code (software build ID or programming that is designed\coded to run on a PCM's specific hardware build) that contains a specific software feature (Torque Management Manual Trans Truncation) coded into it & what this implies vs your specific power train issues ((the P0300 & P0316 DTC's.....these are IM Readiness Component Self-Check diagnostic issues--external\internal I\O functions that have violated internal PCM self-check function diagnostic thresholds thus have caused these DTC's to be thrown--pending--then set--permanent--if the offending condition(s) have not been resolved within a certain # of drive cycles--as few as 2 or as many as 6--depending on the specific condition(s) causing the violations)) which then becomes permanent & sets the MIL.
Long story short, if you're not doing your own tuning yourself (as I also posted in the bottom of my post that you've referred to), then it's not helpful to try to explain any of the ins\outs of a SO PCM's hardware ID code & the relation that the SO PCM's OS Strategy ID code has to each other..........these in general have nothing to do w\ any IM Readiness Component self-check DTC's thus too many folks make this stuff into a red herring to try to assign fault\blame as to why 1 can't resolve a DTC (usually towards the tuner if the PCM was tuned prior).......unless you go thru all the various things outside of the PCM 1st that can cause these DTC's & verify that all these items aren't the cause (these are many) before any focus should be put towards the tuner.....especially if tuner is tuning remotely\PCM itself (usually will end up being some type of hardware fault on the PCM's circuit board\pinout once ALL of the other items that are potential causes are checked & verified to NOT be the culprit--includes wiring & connections checks as well as external components.....but not always...).......but in general, since you've already gone there, TM Torque Truncation is basically OS programmed engine TQ output control by gear, very common in all SO Ford PCM's that control 5R55S auto trans BUT also can be used in SO PCM's that control manual trans IF the specific OS\Strategy ID software that has this feature coded in it is used in a SO PCM that has the hardware onboard to allow it to be used (allows the engine's TQ output to be matched to the specific trans gear ratio being used to optimize power output to ground so vehicle is easier\more predictable to drive or control......especially useful on vehicles using DBW throttle control & are used in some type of competitive racing.......especially those that are FI\ SC'd but also NA if desired.
To date this feature was only offered by Ford, that I know of, on the factory '08-up Spanish Oaks-based S197 FR500S race cars & on the '10 MY Spanish Oaks-based GT500 only (discovered this 1 later on)......thus is a special performance enhancing feature not offered to the general public as an option on production line 05-10 GT's & 07-09 GT500's.......only to certain insider access........most standalone PCM's usually have some form of this feature coded into their firmware by default.......which has nothing to do w\ your specific DTC issues.
So just by me laying this out, it should be very clear that this "feature" isn't a common feature coded into all production line 05-10 SO GT's & it shouldn't be implied that this has anything in common w\ the run of the mill IM Readiness coding used to report IM Readiness Component Self-Check faults to then try to "tell" your tuner to "help" them resolve your issues.
So, I'm sorry but I'm not gonna get in between you & your tuner (Lito).......if you were doing your own tuning, it'd be a different story as I know of some tune settings that can help to create the P0316 DTC w\ these FRPP Hot Rod cams if not known\understood well enough as well as a component that is frequently removed that can also influence a P0316 DTC.......but since you're using a tuner other than yourself, this is best resolved between the 2 of you.
As far as the P0300\P0316 DTC's go, these are usually resolved by tuners changing some tune calibration settings in the Misfire Monitor to not allow this monitor to run during a cold start up to hot idle (this monitor can't be disabled, only tricked) or, if so equipped w\ Ford's PCMTech programming software, can go into the OS Strategy coding & reprogram the IM Readiness specific misfire TID threshold %'s to allow the unnatural crankshaft velocity variation patterns caused by these FRPP Hot Rod cams cam timing profile to fall within "acceptable" diagnostic threshold limits thus not set off these DTC's, or get someone that has Ford's IDS software to then run a neutral neural profile test on your car w\ these FRPP Hot Rod cams installed to capture the unnatural crankshaft velocity variation pattern in the PCM's non-volatile memory--so the PCM has the pattern saved to then ID these patterns as normal thru the CKP sensor.
Good luck w\ this....................US EPA has caught up w\ this stuff............won't be an issue for Lito..........but different for you if the EPA comes knocking......FWIW.
Which most everything I've typed here your tuner most likely already knows................so IMHO you need to heed to what Lito is telling you from a tuner's standpoint\perspective........or start going thru the tuner carousel to find 1 who will do what you think you want them to do............or buy the necessary tuning equipment of your choice & start doing this stuff yourself.........then you'll start finding out what is really real from what is thought of as "perception".
To be fair, this can go both ways as the only folks who really know all the truth are the Ford OEM calibration engineers or some fortunate individual(s) who have access to the Ford calibration "C" code books\files..............no one else.
So, to give some help FWIW, focus on the P0316 DTC as this DTC is usually set from PCM monitoring initial crankshaft velocity variation out of relative pattern (this action is what is referred to as a "misfire".......but more than plugs or coils failing can cause an out of relative pattern......thus the term "misfire" is really a subjective term........) during engine startup (why the 1st 1,000 RPM's) where a LOT of things can cause this (cold start fueling issues--ie, dirty\leaking injectors, fuel filter, fuel pump sock, FRP sensor, bad fuel quality, etc, ignition issues, cylinder issues--ie, valve or ring leakage or oil contamination, MAF sensor issues, TB issues, EVAP issues--ie, leaking CPV, vacuum leaks, so on & so on..........note: O2 sensors are exempt from this P0316 DTC due to PCM being in OL during startup for at least 15 secs if sensors are warm enough to operate then PCM switches into CL from here on.....but can be influencing a P0300 DTC though.....FYI) anything that can cause the engine to stumble during the 1st 1,000 RPM's upon startup (PCM deems engine is started when the engine RPM's exceed 300 after starter engagement.....starter can only spin engine to a max of 160-180 RPM's depending on starter design\quality\battery CCA output......thus "crank" but not "run"). How smooth does the engine starts\runs up to\past the 1st 1,000 RPM's is the key........not necessarily how the FRPP Hot Rod cam's profile is ground..........too many folks use this as a crutch to explain away a P0316 DTC.........
A P0300 DTC is the PCM reading the same out of relative crankshaft velocity variation behavior, but the behavior can't be tied\linked specifically to a specific cylinder thus is deemed to be random.........which is somewhat normal operational pattern during idle w\ FRPP Hot Rod cams due to their timing profile (IVO, IVC, EVO, EVC along w\ OL) when set at VCT 0* position only........the lower the idle speed, the worse this will get.
My 2 cents..............hope this helps.