Those crossovers on our cars are there for a reason. Back a couple decades ago, someone figured out that if they were to equalize the pressure by allowing a slight area where the gases could "crossover" if the pressures so dictated, you would gain a much better equalization of back pressure on both sides of the V-setup engine. V6, V8, V10 and so on, they found that when the pressures are equal on both sides of the engine, they got better exhaust scavenging and thus, picked up some power.
There was a huge aftermarket exhaust shop movement of detecting where best to place a crossover section in the exhaust. Once it was a proven "free" power maker, car companies started building it into their cars.
I'd be willing to bet you that going with straight pipes on the Coyote engine would lower your torque.