Um maybe bc true manifold vacuum has nothing to do with wastegate operation, Well you asked so here ya go flapjack. Plus no ones drills a hole in the turbo all the big name turbo manufactures ie turbonetics, precision, garret, comp, they all come with the port/fitting on the compressor cover.
Heres a pic of mine as it came standard from precision.
There is so much bad information in this post.
The top port would only be used on advanced dual or multi port solenoids on electronic setups where you have alot of back presusre or are trying to run alot of boost on a small spring (ie 30psi with a 9psi wg spring)
The side port is used when running off the wastegate spring or using a manual bc or basic single port electronic boost controller.
There is only one pro to using the manifold as your wg source and it really isnt a pro imho and thats if you have a boost leak or shitty intercooler you will still get the boost you want to the engine. It is not the prefered method for more than a few reasons. One, its less repsonsive and introduces vac to the wg, wg operation calls for a pressure only source which would be right from the turbo compressor housing. This helps prevent presusre spikes on the wg and ensures smoother responsive wg operation. Also prevents from over spinning the turbo if you develop a boost leak somewhere between the turbo and the manifold the turbo will continue to spin up until manifold pressure is reached to fully open the wastegate. In otherwards the turbo might be spinning fast enough to make 30+psi of boost by the time manifold gets the desired 8psi to fully open the wastegate thus more wear and tear on the turbo.
The wastegate is always shut there isnt enough exhaust pressure to push the wg valve open when crusing/part throttle or under boost(when under boost the wg will only open if the pressure source is hooked to the side port on the wg) If the valve is leaking or not fully shut under these conditions its due to a faulty wg.
If you think about how the system operates you will realize the many reasons why most people with aftermarket turbo kits choose a pressure only source for the wg.(not to mention the fact that the major turbo and turbo kit manufactures reccomend a pressure only source for the wg.)