if you put the drive shaft in the back first, there's not enough room at the transmission end to slip it in? that's what i had to do, and in fact that's how dss told me to do. it requires less space to slip it over the transmission flange than the flange/adapter at the rear. if it's still too long, you may need to install adjustable lca's if you don't already have them to give yourself a tiny bit more room. did you give them a measurement before ordering the drive shaft? i got one of their first units, and supplied them with measurements of the opening before they shipped the drive shaft.
also if you have a rubber mallet, you can gently tap the end bottom of the cv joint to make sure it's completely compressed before doing the install. i had to do that also.